Protein ZmWRKY40 | |
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Information | |
TF Name: | ZmWRKY40 |
Species: | Maize |
TF Family: | WRKY |
Gene Name(Synonym): | WRKY40 |
Uniprot ID: | B6SUS2 |
ZmWRKY40 is a protein in the WRKY family.
Overview of domains present in v5 transcripts | |
---|---|
PF03106 | |
Zm00001eb149570_T001 |
Gene ID | Type | MEME Logo | Sequence | FIMO | Position |
---|---|---|---|---|---|
Zm00001d043062 | DAPseq | sequence | fimo | position | |
Zm00001d043062 | DAPseq | sequence | fimo | position | |
Zm00001d043062 | ChIPseq | sequence | fimo | position | |
Zm00001d043062 | PChIPseq | sequence | fimo | position |
MQTQSRLAMSGGGGSGGSSSSSASEDEHEAVIRELTRGHELTAQLRAEALRALRGQGQAEATAAFILQEVSRAFTVCLSI
MSSPARAPPPTMEMPAPALAPRRGRDDSIPREQRRTSSPHSDGYQWRKYGQKRITKSPFPRCYYKCSFHRERSCRATKQV
QQCSDGDGHPPQYVVMYFNEHTCDTAAWEPAAAAAASSGVPLDDLSRSRLQAVLGQGQQGARALLLDERGVQEEHERRLL
VSSLACVLGGQQQQSPAGSGTTTAVDPAVNVGQEQEPPPPRARTPAAVDAAGEMPRIIGVDVAGLDVMDYDVTDALCLAH
SYDDLPDDGFPFC
MQTQSRLAMSGGGGSGGSSSSSASEDEHEAVIRELTRGHELTAQLRAEALRALRGQGQAEATAAFILQEVSRAFTVCLSI
MSSPARAPPPTMEMPAPALAPRRGRDDSIPREQRRTSSPHSDGYQWRKYGQKRITKSPFPRCYYKCSFHRERSCRATKQV
QQCSDGDGHPPQYVVMYFNEHTCDTAAWEPAAAAAASSGVPLDDLSRSRLQAVLGQGQQGARALLLDERGVQEEHERRLL
VSSLACVLGGQQQQSPAGSGTTTAVDPAVNVGQEQEPPPPRARTPAAVDAAGEMPRIIGVDVAGLDVMDYDVTDALCLAH
SYDDLPDDGFPFC
MQTQSRLAMSGGGGSGGSSSSSASEDEHEAVIRELTRGHELTAQLRAEALRALRGQGQAEATAAFILQEVSRAFTVCLSI
MSSPARAPPPTMEMPAPALAPRRGRDDSIPREQRRTSSPHSDGYQWRKYGQKRITKSPFPRCYYKCSFHRERSCRATKQV
QQCSDGDGHPPQYVVMYFNEHTCDTAAWEPAAAAAASSGVPLDDLSRSRLQAVLGQGQQGARALLLDERGVQEEHERRLL
VSSLACVLGGQQQQSPAGSGTTTAVDPAVNVGQEQEPPPPRARTPAAVDAAGEMPRIIGVDVAGLDVMDYDVTDALCLAH
SYDDLPDDGFPFC
MQTQSRLAMSGGGGSGGSSSSSASEDEHEAVIRELTRGHELTAQLRAEALRALRGQGQAEATAAFILQEVSRAFTVCLSI
MSSPARAPPPTMEMPAPALAPRRGRDDSIPREQRRTSSPHSDGYQWRKYGQKRITKSPFPRCYYKCSFHRERSCRATKQV
QQCSDGDGHPPQYVVMYFNEHTCDTAAWEPAAAAAASSGVPLDDLSRSRLQAVLGQGQQGARALLLDERGVQEEHERRLL
VSSLACVLGGQQQQSPAGSGTTTAVDPAVNVGQEQEPPPPRARTPAAVDAAGEMPRIIGVDVAGLDVMDYDVTDALCLAH
SYDDLPDDGFPFC
MQTQSRLAMSGGGGSGGSSSSSASEDEHEAVIRELTRGHELTAQLRAEALRALRGQGQAEATAAFILQEVSRAFTVCLSI
MSSPARAPPPTMEMPAPALAPRRGRDDSIPREQRRTSSPHSDGYQWRKYGQKRITKSPFPRCYYKCSFHRERSCRATKQV
QQCSDGDGHPPQYVVMYFNEHTCDTAAWEPAAAAAASSGVPLDDLSRSRLQAVLGQGQQGARALLLDERGVQEEHERRLL
VSSLACVLGGQQQQSPAGSGTTTAVDPAVNVGQEQEPPPPRARTPAAVDAAGEMPRIIGVDVAGLDVMDYDVTDALCLAH
SYDDLPDDGFPFC
Secondary Structure Color Code | |
---|---|
BEND | region with high backbone curvature without specific hydrogen bonding |
HELX_LH_PP_P | left-handed polyproline helix |
HELX_RH_3T_P | right-handed 3-10 helix |
HELX_RH_AL_P | right-handed alpha helix |
HELX_RH_PI_P | right-handed pi helix |
STRN | beta strand |
TURN_TY1_P | type I turn |
UNDETERMINED | no data available |
Domains Present | |
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PF03106 |
|
Hover here to show all domains |
TTCCCTCCTCTATATAAAAGCCGCC...
TTCCCTCCTCTATATAAAAGCCGCCAGGACGCCTCTTCCTCTACTTCTGTTCTGCCCAACCCCACTCCATCCATCCAAATCAGCTTTGCCTAGCTTATTATTCCTTACCGACAAACAAAACTGACACGGATCCGCACAGAGCAACGAACTCGCCCAGTCCGGCTGCTGCTGCTGCACAACGGACTCGATCTCACGGCCCCGCCGGCTCGCAGCCATGCAGACGCAGTCCCGCCTGGCCATGAGCGGCGGCGGCGGCAGCGGCGGCAGCAGCAGCAGCTCGGCCTCGGAGGACGAGCACGAGGCGGTGATCCGCGAGCTGACGCGGGGGCACGAGCTGACGGCGCAGCTGCGGGCCGAGGCCCTACGCGCGCTGCGCGGGCAGGGCCAGGCCGAGGCCACCGCGGCATTCATCCTGCAGGAGGTGTCCCGCGCCTTCACCGTCTGCCTCTCCATCATGAGCTCGCCCGCCCGCGCCCCGCCGCCGACGATGGAAATGCCCGCGCCTGCCCTGGCCCCGCGACGGGGCCGGGACGACAGCATCCCAAGAGAGCAACGGAGGACGTCCTCGCCGCACAGCGACGGGTACCAGTGGAGGAAGTACGGCCAGAAGAGGATCACTAAGTCGCCGTTTCCGAGGTGCTACTACAAGTGCAGCTTCCACCGCGAGCGCAGCTGCCGGGCCACCAAGCAGGTGCAGCAGTGCAGCGACGGCGACGGCCACCCGCCCCAGTACGTCGTCATGTACTTCAACGAGCACACGTGCGACACGGCGGCCTGGGAGCCCGCGGCGGCGGCGGCGGCTTCCTCGGGGGTGCCGCTGGACGACCTGTCCAGGTCCAGGCTGCAGGCGGTACTAGGCCAGGGCCAGCAGGGCGCTCGCGCGCTGCTGCTGGACGAACGCGGCGTCCAGGAGGAGCACGAGCGCCGGCTTCTCGTCTCGTCGCTCGCCTGCGTGCTCGGGGGCCAGCAGCAGCAGTCTCCTGCGGGCAGCGGAACAACCACGGCCGTCGACCCCGCCGTTAACGTGGGGCAGGAGCAGGAGCCGCCGCCGCCGCGGGCCCGCACGCCTGCGGCCGTTGACGCGGCCGGTGAGATGCCGCGTATCATTGGCGTGGACGTGGCGGGGCTGGATGTCATGGACTACGATGTGACGGACGCGCTGTGTCTCGCCCATTCCTACGACGACCTACCTGACGACGGGTTTCCGTTTTGCTGAGTGCGCAGCCGCACCACATGCATCTTCTCGCGAAACATACGTACGGTACATGTGCCAGGCCCGAGATAGTTCATGTCGGGCGCGACGGGTCACTGAGCCTTTGGTCATAGAACAATTAATACTGTGATATATAGTACTGTCTCTACTACGGAGTACTTATCTAGCAGTAGTAGTAACTACACACTTGCCCAGCTTATTACAGCCAGGCTTTGCGTATCTCCAGATAAGTTTAGGTCAGGCTGGCGTGATTAATTTGCAAGTTCTTTTTTTTTGTGTGTGTGTTAATCAGCGTGCATGCCATGTACTACTAGTTCCCTTGTTTTCGTTCCACTATTACAAGTGTGCAATGTTTTACATATATTACTGTGGATAAAAAACAAAAAAAACGCATACATTGTCAGTAATTTCAGC
MQTQSRLAMSGGGGSGGSSSSSASEDEHEAVIRELTRGHELTAQLRAEALRALRGQGQAEATAAFILQEVSRAFTVCLSI
MSSPARAPPPTMEMPAPALAPRRGRDDSIPREQRRTSSPHSDGYQWRKYGQKRITKSPFPRCYYKCSFHRERSCRATKQV
QQCSDGDGHPPQYVVMYFNEHTCDTAAWEPAAAAAASSGVPLDDLSRSRLQAVLGQGQQGARALLLDERGVQEEHERRLL
VSSLACVLGGQQQQSPAGSGTTTAVDPAVNVGQEQEPPPPRARTPAAVDAAGEMPRIIGVDVAGLDVMDYDVTDALCLAH
SYDDLPDDGFPFC
ACTTCTGTTCTGCCCAACCCCACTC...
ACTTCTGTTCTGCCCAACCCCACTCCATCCATCCAAATCAGCTTTGCCTAGCTTATTATTCCTTACCGACAAACAAAACTGACACGGATCCGCACAGAGCAACGAACTCGCCCAGTCCGGCTGCTGCTGCTGCACAACGGACTCGATCTCACGGCCCCGCCGGCTCGCAGCCATGCAGACGCAGTCCCGCCTGGCCATGAGCGGCGGCGGCGGCAGCGGCGGCAGCAGCAGCAGCTCGGCCTCGGAGGACGAGCACGAGGCGGTGATCCGCGAGCTGACGCGGGGGCACGAGCTGACGGCGCAGCTGCGGGCCGAGGCCCTACGCGCGCTGCGCGGGCAGGGCCAGGCCGAGGCCACCGCGGCATTCATCCTGCAGGAGGTGTCCCGCGCCTTCACCGTCTGCCTCTCCATCATGAGCTCGCCCGCCCGCGCCCCGCCGCCGACGATGGAAATGCCCGCGCCTGCCCTGGCCCCGCGACGGGGCCGGGACGACAGCATCCCAAGAGAGCAACGGAGGACGTCCTCGCCGCACAGCGACGGGTACCAGTGGAGGAAGTACGGCCAGAAGAGGATCACTAAGTCGCCGTTTCCGAGGTGCTACTACAAGTGCAGCTTCCACCGCGAGCGCAGCTGCCGGGCCACCAAGCAGGTGCAGCAGTGCAGCGACGGCGACGGCCACCCGCCCCAGTACGTCGTCATGTACTTCAACGAGCACACGTGCGACACGGCGGCCTGGGAGCCCGCGGCGGCGGCGGCGGCTTCCTCGGGGGTGCCGCTGGACGACCTGTCCAGGTCCAGGCTGCAGGCGGTACTAGGCCAGGGCCAGCAGGGCGCTCGCGCGCTGCTGCTGGACGAACGCGGCGTCCAGGAGGAGCACGAGCGCCGGCTTCTCGTCTCGTCGCTCGCCTGCGTGCTCGGGGGCCAGCAGCAGCAGTCTCCTGCGGGCAGCGGAACAACCACGGCCGTCGACCCCGCCGTTAACGTGGGGCAGGAGCAGGAGCCGCCGCCGCCGCGGGCCCGCACGCCTGCGGCCGTTGACGCGGCCGGTGAGATGCCGCGTATCATTGGCGTGGACGTGGCGGGGCTGGATGTCATGGACTACGATGTGACGGACGCGCTGTGTCTCGCCCATTCCTACGACGACCTACCTGACGACGGGTTTCCGTTTTGCTGAGTGCGCAGCCGCACCACATGCATCTTCTCGCGAAACATACGTACGGTACATGTGCCAGGCCCGAGATAGTTCATGTCGGGCGCGACGGGTCACTGAGCCTTTGGTCATAGAACAATTAATACTGTGATATATAGTACTGTCTCTACTACGGAGTACTTATCTAGCAGTAGTAGTAACTACACACTTGCCCAGCTTATTACAGCCAGGCTTTGCGTATCTCCAGATAAGTTTAGGTCAGGCTGGCGTGATTAATTTGCAAGTTCTTTTTTTTTGTGTGTGTGTTAATCAGCGTGCATGCCATGTACTACTAGTTCCCTTGTTTTCGTTCCACTATTACAAGTGTGCAATGTTTTACATATATTACTGTGGATAAAAAACAAAAAAAACGCATACATTGTCAGTAATTTCAGCCGTC
MQTQSRLAMSGGGGSGGSSSSSASEDEHEAVIRELTRGHELTAQLRAEALRALRGQGQAEATAAFILQEVSRAFTVCLSI
MSSPARAPPPTMEMPAPALAPRRGRDDSIPREQRRTSSPHSDGYQWRKYGQKRITKSPFPRCYYKCSFHRERSCRATKQV
QQCSDGDGHPPQYVVMYFNEHTCDTAAWEPAAAAAASSGVPLDDLSRSRLQAVLGQGQQGARALLLDERGVQEEHERRLL
VSSLACVLGGQQQQSPAGSGTTTAVDPAVNVGQEQEPPPPRARTPAAVDAAGEMPRIIGVDVAGLDVMDYDVTDALCLAH
SYDDLPDDGFPFC
ACTTCTGTTCTGCCCAACCCCACTC...
ACTTCTGTTCTGCCCAACCCCACTCCATCCATCCAAATCAGCTTTGCCTAGCTTATTATTCCTTACCGACAAACAAAACTGACACGGATCCGCACAGAGCAACGAACTCGCCCAGTCCGGCTGCTGCTGCTGCACAACGGACTCGATCTCACGGCCCCGCCGGCTCGCAGCCATGCAGACGCAGTCCCGCCTGGCCATGAGCGGCGGCGGCGGCAGCGGCGGCAGCAGCAGCAGCTCGGCCTCGGAGGACGAGCACGAGGCGGTGATCCGCGAGCTGACGCGGGGGCACGAGCTGACGGCGCAGCTGCGGGCCGAGGCCCTACGCGCGCTGCGCGGGCAGGGCCAGGCCGAGGCCACCGCGGCATTCATCCTGCAGGAGGTGTCCCGCGCCTTCACCGTCTGCCTCTCCATCATGAGCTCGCCCGCCCGCGCCCCGCCGCCGACGATGGAAATGCCCGCGCCTGCCCTGGCCCCGCGACGGGGCCGGGACGACAGCATCCCAAGAGAGCAACGGAGGACGTCCTCGCCGCACAGCGACGGGTACCAGTGGAGGAAGTACGGCCAGAAGAGGATCACTAAGTCGCCGTTTCCGAGGTGCTACTACAAGTGCAGCTTCCACCGCGAGCGCAGCTGCCGGGCCACCAAGCAGGTGCAGCAGTGCAGCGACGGCGACGGCCACCCGCCCCAGTACGTCGTCATGTACTTCAACGAGCACACGTGCGACACGGCGGCCTGGGAGCCCGCGGCGGCGGCGGCGGCTTCCTCGGGGGTGCCGCTGGACGACCTGTCCAGGTCCAGGCTGCAGGCGGTACTAGGCCAGGGCCAGCAGGGCGCTCGCGCGCTGCTGCTGGACGAACGCGGCGTCCAGGAGGAGCACGAGCGCCGGCTTCTCGTCTCGTCGCTCGCCTGCGTGCTCGGGGGCCAGCAGCAGCAGTCTCCTGCGGGCAGCGGAACAACCACGGCCGTCGACCCCGCCGTTAACGTGGGGCAGGAGCAGGAGCCGCCGCCGCCGCGGGCCCGCACGCCTGCGGCCGTTGACGCGGCCGGTGAGATGCCGCGTATCATTGGCGTGGACGTGGCGGGGCTGGATGTCATGGACTACGATGTGACGGACGCGCTGTGTCTCGCCCATTCCTACGACGACCTACCTGACGACGGGTTTCCGTTTTGCTGAGTGCGCAGCCGCACCACATGCATCTTCTCGCGAAACATACGTACGGTACATGTGCCAGGCCCGAGATAGTTCATGTCGGGCGCGACGGGTCACTGAGCCTTTGGTCATAGAACAATTAATACTGTGATATATAGTACTGTCTCTACTACGGAGTACTTATCTAGCAGTAGTAGTAACTACACACTTGCCCAGCTTATTACAGCCAGGCTTTGCGTATCTCCAGATAAGTTTAGGTCAGGCTGGCGTGATTAATTTGCAAGTTCTTTTTTTTTGTGTGTGTGTTAATCAGCGTGCATGCCATGTACTACTAGTTCCCTTGTTTTCGTTCCACTATTACAAGTGTGCAATGTTTTACATATATTACTGTGGATAAAAAACAAAAAAA
MYFNEHTCDTAAWEPAAAAAASSGAAEQPRPSTPPLTWGRSRSRRRRGPARLRPLTRPVRCRVSLAWTWRGWMSWTTM
GGACGTCCTCGCCGCACAGCGACGG...
GGACGTCCTCGCCGCACAGCGACGGGTACCAGTGGAGGAAGTACGGCCAGAAGAGGATCACTAAGTCGCCGTTTCCGAGGTGCTACTACAAGTGCAGCTTCCACCGCGAGCGCAGCTGCCGGGCCACCAAGCAGGTGCAGCAGTGCAGCGACGGCGACGGCCACCCGCCCCAGTACGTCGTCATGTACTTCAACGAGCACACGTGCGACACGGCGGCCTGGGAGCCCGCGGCGGCGGCGGCGGCTTCCTCGGGGGCAGCGGAACAACCACGGCCGTCGACCCCGCCGTTAACGTGGGGCAGGAGCAGGAGCCGCCGCCGCCGCGGGCCCGCACGCCTGCGGCCGTTGACGCGGCCGGTGAGATGCCGCGTATCATTGGCGTGGACGTGGCGGGGCTGGATGTCATGGACTACGATGTGACGGACGCGCTGTGTCTCGCCCATTCCTACGACGACCTACCTGACGACGGGTTTCCGTTTTGCTGAGTGCGCAGCCGCACCACATGCATCTTCTCGCGAAACATACGTACGGTACATGTGCCAGGCCCGAGATAGTTCATGTCGGGCGCGACGGGTCACTGAGCCTTTGGTCATAGAACAATTAATACTGTGATATATAGTACTGTCTCTACTACGGAGTACTTATCTAGCAGTAGTAGTAACTACACACTTGCCCAGCTTATTACAGCCAGGCTTTGCGTATCTCCAGATAAGTTTAGGTCAGGCTGGCGTGATTAATTTGCAAGTTCTTTTTTTTTGTGTGTGTGTTAATCAGCGTGCATGCCATGTACTACTAGTTCCCTTGTTTTCGTTCCACTATTACAAGTGTGCAATGTTTTAC
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